Jasmine Y. Young
Research Professor, Rutgers, The State University of New Jersey
Biocuration Team Lead, RCSB Protein Data Bank
Global Project Lead, worldwide Protein Data Bank
Center for Integrative Proteomics Research

Tel: 848-445-4920
Email Address: jasmine.young@rcsb.org
ORCID ID: https://orcid.org/0000-0001-8896-6878
Highest Earned Degree
Ph.D., University of Florida, Chemistry, 1996
Certificates and Licenses Held
Leadership Development Certificate, Center for management development at Rutgers, 2009
Certified Bioinformatics Specialist and Master, National BioInstitute(NBI), 2000.
  Honors and Awards
Honor of Russell Dissertation Fellowship, 1996
Professional Awards and Honors
Journal Reviewer for Protein Science
Invited speaker, “US Government Chemical Databases and Open Chemistry” session at ACS meeting
Invited speaker, “Apply Macromolecular Crystallography Best Practices to your Challenging Diffraction Data” session at ACA meeting
Presented development outcomes of wwPDB OneDep project at worldwide PDB Advisory Meeting
Appointed as Global Project Lead, managing worldwide PDB projects including Deposition, Validation, Biocuration, and archive remediation across wwPDB partner sites
Journal Reviewer for Database, The Journal of Biological Databases and Curation
Invited speaker and co-chair, 3rd "Theoretical Model Archiving, Validation and PDBx/mmCIF Data Exchange Format " PSI Protein Modeling Workshop
Invited session chair: “Protein structure, complexes, and interactions” at Internal Biocuration Meeting
Invited panel discussion: “How do we get (authors to put, and publishers to accept if not require) chemistry information in a computer-readable format into primary chemical literature?” at U.S. Government Chemical Databases and Open Chemistry
Journal Reviewer for PLoS Computational Biology
Award for outstanding presentation at Florida section ACS Meeting
Honor of Russell Dissertation Fellowship
Vice President of Chinese Student Association at University of Florida
  Research Interests
Description of Research and Scholarly or Creative Objectives
Since 2008, in my role as RCSB PDB Biocuration Team Lead, I oversee practices, management, and OneDep tool developments for data deposition, curation, validation, and remediation of the PDB archive to ensure data standardization, high quality and uniformity. Collaborating with wwPDB partners globally, I represent RCSB PDB to set common annotation practices and procedures, to establish daily operation and weekly release procedures, and to set data standards at the PDB.

As a Global Project Lead since 2015, I manage international wwPDB projects including OneDep tool and data remediation across wwPDB partner sites. I lead our on-going data analysis and strategic planning for improved PDB data representation and OneDep system. Most recently, these remediation efforts have enabled data standardization of carbohydrate entries. The OneDep system has been improved since the initial deployment and has already been used for the deposition and annotation of all new PDB entries.
  Employment History
Positions Held
2018-ongoing: wwPDB Global Project Lead/Biocuration Team Lead/Research Professor, RCSB Protein Data Bank, Rutgers University, New Brunswick, NJ
2015-2018: Biocuration Team Lead/Associate Research Professor, RCSB Protein Data Bank, Rutgers University, New Brunswick, NJ
2007-2014: Lead Biocurator/Assistant Research Professor, RCSB Protein Data Bank, Rutgers University, New Brunswick, NJ
2005-2006: Annotation & Curation Trainer/Research Associate, RCSB Protein Data Bank, Rutgers University, New Brunswick, NJ
2003-2007: Research Associate, RCSB Protein Data Bank, Rutgers University, New Brunswick, NJ
Articles in Refereed Journals
Burley, et al., RCSB Protein Data Bank (RCSB.org): Delivery of Experimentally-Determined PDB Structures Alongside One Million Computed Structure Models of Proteins from Artificial Intelligence/Machine Learning. (2022) NAR. In press
Burley, et al., RCSB Protein Data Bank: Tools for visualizing and understanding biological macromolecules in 3D. (2022) Protein Science. doi: 10.1002/pro.4482
Burley, et al., Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students. (2022) Biomolecules, 12(10), 1425. doi: 10.3390/biom12101425 
Westbrook, et al., PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology. (2022) JMB doi: 10.1016/j.jmb.2022.167599
Shao et al., Simplified Quality Assessment for Small-molecule Ligands in the Protein Data Bank. (2021) Structure 30: 252-262.e4 doi: 10.1016/j.str.2021.10.003.
Burley et al., RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D. (2021) Protein Science 31: 187-208 doi: 10.1002/pro.4213
Shao C, Feng Z, Westbrook JD, Peisach E, Berrisford J, Ikegawa Y, Kurisu G, Velankar S, Burley SK, Young JY. Modernized Uniform Representation of Carbohydrate Molecules in theProtein Data Bank. Glycobiology. 2021 May 8;. doi: 10.1093/glycob/cwab039. [Epub ahead of print] PubMed PMID: 33978738.
Young JY, Berrisford J, Chen M. wwPDB biocuration: on the front line of structural biology. Nat Methods. 2021 May;18(5):431-432. doi: 10.1038/s41592-021-01137-z. PubMed PMID: 33963335.
Feng Z, Westbrook JD, Sala R, Smart OS, Bricogne G, Matsubara M, Yamada I, Tsuchiya S, Aoki-Kinoshita KF, Hoch JC, Kurisu G, Velankar S, Burley SK, Young JY. Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank. Structure. 2021 Apr 1;29(4):393-400.e1. doi: 10.1016/j.str.2021.02.004. Epub 2021 Mar 2. PubMed PMID: 33657417; PubMed Central PMCID: PMC8026741.
Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Christie CH, Dalenberg K, Di Costanzo L, Duarte JM, Dutta S, Feng Z, Ganesan S, Goodsell DS, Ghosh S, Green RK, Guranović V, Guzenko D, Hudson BP, Lawson CL, Liang Y, Lowe R, Namkoong H, Peisach E, Persikova I, Randle C, Rose A, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Tao YP, Voigt M, Westbrook JD, Young JY, Zardecki C, Zhuravleva M. RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. Nucleic Acids Res. 2021 Jan 8;49(D1):D437-D451. doi: 10.1093/nar/gkaa1038. PubMed PMID: 33211854; PubMed Central PMCID: PMC7779003.
Goodsell DS, Zardecki C, Di Costanzo L, Duarte JM, Hudson BP, Persikova I, Segura J, Shao C, Voigt M, Westbrook JD, Young JY, Burley SK. RCSB Protein Data Bank: Enabling biomedical research and drug discovery. Protein Sci. 2020 Jan;29(1):52-65. doi: 10.1002/pro.3730. Epub 2019 Nov 29. PubMed PMID: 31531901; PubMed Central PMCID: PMC6933845.
Adams PD, Afonine PV, Baskaran K, Berman HM, Berrisford J, Bricogne G, Brown DG, Burley SK, Chen M, Feng Z, Flensburg C, Gutmanas A, Hoch JC, Ikegawa Y, Kengaku Y, Krissinel E, Kurisu G, Liang Y, Liebschner D, Mak L, Markley JL, Moriarty NW, Murshudov GN, Noble M, Peisach E, Persikova I, Poon BK, Sobolev OV, Ulrich EL, Velankar S, Vonrhein C, Westbrook J, Wojdyr M, Yokochi M, Young JY. Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). Acta Crystallogr D Struct Biol. 2019 Apr 1;75(Pt 4):451-454. doi: 10.1107/S2059798319004522. PMID: 3098826.
Burley SK, Berman HM, Bhikadiya C, Bi C, Chen L, Di Costanzo L, Christie C, Dalenberg K, Duarte JM, Dutta S, Feng Z, Ghosh S, Goodsell DS, Green RK, Guranovic V, Guzenko D, Hudson BP, Kalro T, Liang Y, Lowe R, Namkoong H, Peisach E, Periskova I, Prlic A, Randle C, Rose A, Rose P, Sala R, Sekharan M, Shao C, Tan L, Tao YP, Valasatava Y, Voigt M, Westbrook J, Woo J, Yang H, Young J, Zhuravleva M, Zardecki C. RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. 2019 Jan 8;47(D1):D464-D474. doi: 10.1093/nar/gky1004. PMID: 30357411.
wwPDB consortium. Protein Data Bank: the single global archive for 3D macromolecular structure data. Nucleic Acids Res. 2019 Jan 8;47(D1):D520-D528. doi: 10.1093/nar/gky949. PMID: 30357364

Burley SK, Berman HM, Christi, C, Duarte, JM, Feng Z, Westbrook J, Young J, Zardecki C. RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education. Protein Sci. 2018 Jan;27(1):316-330. doi: 10.1002/pro.3331. PMID: 29067736.
Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, Chen M, Clark AR, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP1, Ikegawa Y, Kengaku Y, Lawson CL, Liang Y, Mak L, Mukhopadhyay A, Narayanan B, Nishiyama K, Patwardhan A, Sahni G, Sanz-García E, Sato J, Sekharan MR, Shao C, Smart OS, Tan L, van Ginkel G, Yang H, Zhuravleva MA, Markley JL, Nakamura H, Kurisu G, Kleywegt GJ, Velankar S, Berman HM, Burley SK. Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay002. PMID: 29688351
Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K , Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Peisach E, Sahni G, Sekharan MR, Sen S, Shao C, Smart OS, Ulrich EL, Yamashita R, Quesada M, Young JY, Nakamura H, Markley JL, Berman HM, Burley SK, Velankar S, and Kleywegt GJ. Validation of the Structures in the Protein Data Bank. 2017 Dec 5;25(12):1916-1927. doi: 10.1016/j.str.2017.10.009. PMID: 29174494
Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PM, Hudson BP, Igarashi R, Ikegawa Y, Kobayashi N, Lawson CL, Liang Y, Mading S, Mak L, Mir MS, Mukhopadhyay A, Patwardhan A, Persikova I, Rinaldi L, Sanz-Garcia E, Sekharan MR, Shao C, Swaminathan GJ, Tan L, Ulrich EL, van Ginkel G, Yamashita R, Yang H, Zhuravleva MA, Quesada M, Kleywegt GJ, Berman HM, Markley JL, Nakamura H, Velankar S, Burley SK. OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. Structure. 2017 Mar 7;25(3):536-545. doi: 10.1016/j.str.2017.01.004. Epub 2017 Feb 9. PubMed PMID: 28190782; PubMed Central PMCID: PMC5360273.
Shao C, Yang H, Westbrook JD, Young JY, Zardecki C, Burley SK. Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive. Structure. 2017 Mar 7;25(3):458-468. doi: 10.1016/j.str.2017.01.013. Epub 2017 Feb 16. PubMed PMID: 28216043.
Rose PW, Prlić A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, Peisach E, Randle C, Rose AS, Shao C, Tao YP, Valasatava Y, Voigt M, Westbrook JD, Woo J, Yang H, Young JY, Zardecki C, Berman HM, Burley SK. The RCSB protein data bank: integrative view of protein, gene and 3D structural information. Nucleic Acids Res. 2017 Jan 4;45(D1):D271-D281. doi: 10.1093/nar/gkw1000. Epub 2016 Oct 27. PubMed PMID: 27794042; PubMed Central PMCID: PMC5210513.
Yang H, Peisach E, Westbrook JD, Young J, Berman HM, Burley SK. DCC: a Swiss army knife for structure factor analysis and validation. J Appl Crystallogr. 2016 Apr 18;49(Pt 3):1081-1084. eCollection 2016 Jun 1. PubMed PMID: 27275151; PubMed Central PMCID: PMC4886994.
Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, Feher VA, Feng Z, Groom CR, Harris SF, Hendle J, Holder T, Joachimiak A, Kleywegt GJ, Krojer T, Marcotrigiano J, Mark AE, Markley JL, Miller M, Minor W, Montelione GT, Murshudov G, Nakagawa A, Nakamura H, Nicholls A, Nicklaus M, Nolte RT, Padyana AK, Peishoff CE, Pieniazek S, Read RJ, Shao C, Sheriff S, Smart O, Soisson S, Spurlino J, Stouch T, Svobodova R, Tempel W, Terwilliger TC, Tronrud D, Velankar S, Ward SC, Warren GL, Westbrook JD, Williams P, Yang H, Young J. Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. Structure. 2016 Apr 5;24(4):502-508. doi: 10.1016/j.str.2016.02.017. PubMed PMID: 27050687; PubMed Central PMCID: PMC5070601.
 Westbrook JD, Shao C, Feng Z, Zhuravleva M, Velankar S, Young J. The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank. Bioinformatics. 2015 Apr 15;31(8):1274-8. doi: 10.1093/bioinformatics/btu789. Epub 2014 Dec 2. PubMed PMID: 25540181; PubMed Central PMCID: PMC4393513.
Rose PW, Prlić A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley SK. The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Res. 2015 Jan;43(Database issue):D345-56. doi: 10.1093/nar/gku1214. Epub 2014 Nov 26. PubMed PMID: 25428375; PubMed Central PMCID: PMC4383988.
Shuchismita Dutta, Dimitris Dimitropoulos, Zukang Feng, Irina Periskova, Sanchayita Sen, Chenghua Shao, John Westbrook, Jasmine Young, Marina Zhuravleva, Gerard Kleywegt, Helen Berman. "Improving the Representation of Peptide-Like Inhibitor and Antibiotic Molecules in the Protein Data Bank". Biopolymers. 2014 Jun;101(6):659-68. doi: 10.1002/bip.22434. PubMed PMID: 24173824; PubMed Central PMCID: PMC3992913.
Helen Berman, Buvaneswari Coimbatore Narayanan, Luigi Di Costanzo, Shuchismita Dutta, Sutapa Ghosh, Brian Hudson, Catherine L Lawson, Ezra Peisach, Andreas Prlić, Peter W Rose, Chenghua Shao, Huanwang Yang, Jasmine Young, Christine Zardecki “Trendspotting in the Protein Data Bank”. FEBS Lett., (2013) 587(8):1036-45. doi: 10.1016/j.febslet.2012.12.029
Jasmine Young, Zukang Feng, Dimitris Dimitropoulos, Raul Sala, John Westbrook, Marina Zhuravleva, Chenghua Shao, Ezra Peisach, Martha Quesada, Helen Berman "Chemical Annotation of Small and Peptide-Like Molecules at the Protein Data Bank". (2013) Database, doi: 10.1093/database/bat079
Henderson R, Sali A, Baker ML, Carragher B, Devkota B, Downing KH, Egelman EH, Feng Z, Frank J, Grigorieff N, Jiang W, Ludtke SJ, Medalia O, Penczek PA, Rosenthal PB, Rossmann MG, Schmid MF, Schröder GF, Steven AC, Stokes DL, Westbrook JD, Wriggers W, Yang H, Young J, Berman HM, Chiu W, Kleywegt GJ, Lawson CL. “Outcome of the First Electron Microscopy Validation Task Force Meeting.” (2012) Structure, 20(2):205-214, doi:10.1016/j.str.2011.12.014
Peter W. Rose, Chunxiao Bi, Wolfgang F. Bluhm, Cole H. Christie, Dimitris Dimitropoulos, Shuchismita Dutta, Rachel K. Green, David S. Goodsel, Andreas Prlic´, Martha Quesada, Gregory B. Quinn, Alexander G. Ramos, John D. Westbrook, Jasmine Young, Christine Zardecki, Helen M. Berman and Philip E. Bourne. “The RCSB Protein Data Bank: new resources for research and education” (2012) Nucleic Acids Research, 1–8, doi:10.1093/nar/gks1200
Pascale Gaudet, Cecilia Arighi, Frederic Bastian, Alex Bateman, Judith A Blake, Michael J Cherry, Peter D'Eustachio, Robert Finn, Michelle Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica Munoz-Torres, Darren Natale, Claire O'Donovan, Francis Ouellette, Kim D Pruitt, Marc Robinson-Rechavi, Susanna-Assunta Sansone, Paul Schofield, Granger Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy Wu, Jasmine Young, Raja Mazumder. “Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.” (2012) Database, The Journal of Biological Databases and Curation. DOI:10.1093/database/bas036
Rose PW, Beran B, Bi C, Bluhm WF, Dimitropoulos D, Goodsell DS, Prlic A, Quesada M, Quinn GB, Westbrook JD, Young J, Yukich B, Zardecki C, Berman HM, Bourne PE. “The RCSB Protein Data Bank: redesigned web site and web services” (2011) Nucleic Acids Res. 39: D392-D401 doi:10.1093/nar/gkq1021
Bluhm WF, Beran B, Bi C, Dimitropoulos D, Prlic A, Quinn GB, Rose PW, Shah C, Young J, Yukich B, Berman HM, Bourne PE. “Quality assurance for the query and distribution systems of the RCSB Protein Data Bank” (2011) Database doi:10.1093/database/bar003
P.E. Bourne, B. Beran, C. Bi, W.F. Bluhm, D. Dimitropoulos, Z. Feng, D.S. Goodsell, A. Prlic, G.B. Quinn, P.W. Rose, J. Westbrook, B. Yukich, J. Young, C. Zardecki, H.M. Berman. “The evolution of the RCSB Protein Data Bank website” (2011) WIREs Computational Molecular Science 1: 782-789 doi:10.1002/wcms.57
A. Kryshtafovych, J. Moult, S.G. Bartual, J.F. Bazan, H. Berman, D.E. Casteel, E. Christodoulou, J.K. Everett, J. Hausmann, T. Heidebrecht, T. Hills, R. Hui, J.F. Hunt, J. Seetharaman, A. Joachimiak, M.A. Kennedy, C. Kim, A. Linge, K. Michalska, G.T. Montelione, J.M. Otero, A. Perrakis, J.C. Pizarro, M.J. van Raaij, T.A. Ramelot, F. Rousseau, L. Tong, A.K. Wernimont, J. Young, T. Schwede “Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction” (2011) Proteins: Structure, Function, and Bioinformatics 79: 6-20 doi:10.1002/prot.23196
Dutta S, Burkhardt K, Young J, Swaminathan GJ, Matsuura T, Henrick K, Nakamura H, Berman HM. Data Deposition and Annotation at the Worldwide Protein Data Bank Mol Biotechnol” (2009) 42:1-13. doi: 10.1007/s12033-008-9127-7
K. Henrick, Z. Feng, W.F. Bluhm, D. Dimitropoulos, J.F. Doreleijers, S. Dutta, J.L. Flippen-Anderson, J. Ionides, C. Kamada, E. Krissinel, C.L. Lawson, J.L. Markley, H. Nakamura, R. Newman, Y. Shimizu, J. Swaminathan, S. Velankar, J. Ory, E.L. Ulrich, W. Vranken, J. Westbrook, R. Yamashita, H. Yang, J. Young, M. Yousufuddin and H.M. Berman.
Remediation of the Protein Data Bank archive (2008) Nucleic Acids Research 36: D426-433. doi: 10.1093/nar/gkm937
Andrec M, Snyder DA, Zhou Z, Young J, Montelione GT, Levy RM. "A large data set comparison of protein structures determined by crystallography and NMR: statistical test for structural differences and the effect of crystal packing." Proteins. (2007) Proteins 69(3): 449-65. doi: 10.1002/prot.21507
Y.J. Yang, R.L. Pizzolatto, and M.C. Messmer " Internal-External Reflection Sum-Frequency Generation Spectroscopy at an Interface" J. Opt. Soc., B, 2000, 17, pp.638-645.
R.L. Pizzolatto, Y.J. Yang, L.K. Wolf, and M.C. Messmer "Conformational Aspects of Model Chromatographic Surfaces Studied by Sum-Frequency" Anal. Chimica Acta 397, 1999, pp.81
Y. Yang, H.V. Linnerd, K.R. Williams, J.M. Riveros and J.R. Eyler "Photodetachment of Singly-Solvated Halide Ions" J. Phys. Chem. 101, 1997, pp.2371.
D. Peiris, Y. Yang, R. Ramanathan, C. Watson and J. Eyler "Infrared Multiple Photon Dissociation of Electrosprayed Crown Ether Complexes" Int. J. of Mass Spec. and Ion Processes, 157, 1996, pp.365.
Y.R. Lee, Y.J. Yang, Y.Y. Lin and S.M. Lin "Photodissociation of CBrCl3 at193 nm by Translational Spectroscopy" J. Chem. Phys. 103, 1995, pp.6966.
Y.R. Lee, Y.J. Yang, Y.Y. Lin and S.M. Lin "Photodissociation of CBrCl3 at 248 nm by Translational Spectroscopy" Chem. Phys. Lett. 222, 1994, pp.141.
Chapters in Books or Monographs
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C., Berman, H.M. (2012), The Nucleic Acid Database. International Tables for Crystallography. Vol. F, ch. 24.2, pp. 833-837
Dutta, S., Burkhardt, K., Young, J., Swaminathan, G.J., Matsuura T., Henrick, K., Nakamura, H., Berman, H.M. (2009) Data Deposition and Annotation at the Worldwide Protein Data Bank. Mol Biotechnol. 42(1):1-13. Epub 2008 Dec 10
Bohdan Schneider, Joanna de la Cruz, Zukang Feng, Li Chen, Shuchismita Dutta, Irina Persikova, John D. Westbrook, Huanwang Yang, Jasmine Young, Christine Zardecki, and Helen M. Berman (2009). The Nucleic Acid Database. In Jenny Gu & Philip E. Bourne (Eds.), Structural Bioinformatics, 2nd Edition (305-320). Hoboken, NJ: John Wiley & Sons.
L.K. Wolf, Y.J. Yang, R.L. Pizzolatto, and M.C. Messmer “Microscopic Structure of Chromatographic Interfaces as Studied by Sum-Frequency Generation Spectroscopy” in “Interfacial Properties on the Submicron Scale” ACS/Oxford Press, 2000, 781, pp.293-30.
Published Conference Proceedings
Young, J. The life and times of the PDB format – Looking towards the future with mmCIF. (2022) F1000Research, 11:436 (slides) doi: 10.7490/f1000research.1118943.1
Young, J. wwPDB Biocuration: On the front line of structural biology. F1000Research 2021, 10:876 (slides) doi: 10.7490/f1000research.1118777.1
J. Flatt, J. M. Duarte, C. Bhikadiya, C. Bi, S. Bittrich, Li Chen, S. Dutta, R. Lowe, A. S. Rose, Y. Rose, J. Segura, J. Westbrook and J. Y. Young. The next generation RCSB.org. Acta Cryst. (2021). A77, a275. https://doi.org/10.1107/S0108767321097245 
C. Zardecki, J. Young, J. Westbrook, Z. Feng, E. Peisach, I. Persikova, Y. Liang, A. Gutmanas, J. Berrisford, Y. Ikegawa, M. Chen, S. K. Burley, S. Valenkar and G. Kurisu. Enabling depositor-initiated PDB coordinate replacement through file versioning. Acta Cryst. (2019). A75, a25. https://doi.org/10.1107/S0108767319099744 
C. Zardecki, H. M. Berman, C. Christie, J. M. Duarte, Z. Feng, J. Westbrook, J. Young and S. K. Burley. RCSB Protein Data Bank: sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education. Acta Cryst. (2018). A74, a118. https://doi.org/10.1107/S0108767318098811 
C. Zardecki, C. Shao, J. Westbrook, Z. Feng and J. Young. RCSB Protein Data Bank: enabling breakthroughs in biomedical research and structure-guided drug discovery. Acta Cryst. (2018). A74, a120. https://doi.org/10.1107/S0108767318098793 
C. L. Lawson, M. J. Gabanyi, J. Westbrook, J. Young, S. Dutta, E. Peisach, B. P. Hudson, P. Rose, J. Duarte, A. Sarjeant, S. K. Burley and H. M. Berman. New online curriculum: the PDB pipeline and data archiving. Acta Cryst. (2018). A74, a243. https://doi.org/10.1107/S0108767318097568 
J.Y. Young. Validating the structure at the wwPDB. Acta Cryst. (2017). A73, a46. doi: 10.1107/S0108767317099548 
J. Y. Young, J. Westbrook, Z. Feng, wwPDB Biocuration Team, wwPDB Onedep Team, J. Markley, H. Nakamura, S. Velankar and S. K. Burley. OneDep: unified wwPDB system for deposition, biocuration and validation of macromolecular structures in the PDB archive. Acta Cryst. (2017). A73, a47. doi: 10.1107/S0108767317099536 
C. Shao, H. Yang, J. D. Westbrook, J. Young, C. Zardecki and S. K. Burley. Multivariate analyses of quality metrics for crystal structures in the PDB archive. Acta Cryst. (2017). A73, a187-a188. doi: 10.1107/S0108767317098142 
C. Zardecki, S. K. Burley, C. Christie, J. Duarte, Z. Feng, A. Prlic, A. Rose, J. D. Westbrook and J. Young. RCSB PDB: structural biology views for basic and applied research. Acta Cryst. (2017). A73, C1177. doi:10.1107/S2053273317083978 
J. Westbrook, Z. Feng, S. Gore, C. Lawson, T. Oldfield, M. Quesada, S. Sen, S. Velankar, H. Yang and J. Young, The New wwPDB Deposition and Annotation System. Acta Cryst. (2014). A70, C1682. doi:10.1107/S205327331408317X 
J. Westbrook, H. M. Berman, J. Young and G. J. Kleywegt The wwPDB Working Format: A Simplified Application of CIF Technology. Acta Cryst. (2011). A67, C194-C195. doi:10.1107/S0108767311095158 
M. Quesada, J. Westbrook, T. Oldfield, J. Young, J. Swaminathan, Z. Feng, S. Velankar, T. Matsuura, E. Ulrich, S. Madding, G. J. Kleywegt, J. L. Markley, H. Nakamura and H. M. Berman (2011) The wwPDB common tool for deposition and annotation. Acta Cryst, A67, C403-C404.
Young, J. Annotation and Curation of the Protein Data Bank. Nature Precedings (2009). International Biocuration Meeting